PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552728.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 147aa    MW: 16235.5 Da    PI: 10.1057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-106497439
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     ++ +Ed+l+++++++lG++ W++Ia +++ gR++ q
   XP_010552728.1 64 FSGDEDDLIIKLHALLGNR-WSLIAGRLP-GRSDDQ 97
                     7889***************.*********.***976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.31E-134197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-54168IPR009057Homeodomain-like
PROSITE profilePS5129414.02356110IPR017930Myb domain
PfamPF002491.4E-86297IPR001005SANT/Myb domain
CDDcd001672.29E-76497No hitNo description
Gene3DG3DSA:1.10.10.609.0E-136997IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MRSLTTQEDM KRGALIMSEQ VNRKLIHTFR YRRGRLPLGG VRCGKSCRAR RINHARPELK  60
TGGFSGDEDD LIIKLHALLG NRWSLIAGRL PGRSDDQPHN NAMADIAYKA DDESSASHST  120
GPSDHGIVPV DPMPPTASLL ERIINVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-154211140109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552728.11e-105PREDICTED: transcription repressor MYB6 isoform X4
SwissprotQ388514e-25MYB6_ARATH; Transcription repressor MYB6
SwissprotQ9SZP17e-25MYB4_ARATH; Transcription repressor MYB4
TrEMBLI3S5567e-28I3S556_LOTJA; Uncharacterized protein
STRINGVIT_01s0011g04760.t011e-25(Vitis vinifera)
STRINGSolyc05g008250.1.11e-25(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-26myb domain protein 6